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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74258926_74259735_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74258926 - 74259735
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCGATTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTAATCTGACAT
Flanking Amino Acid:
TTAPLALYINVIRGICDDYN
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.7
41.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
79.2
0.66
0.9
73.2
36.9
Minor 5ss
41.6
-0.9
3.1
53.4
44.8
Minor BPS
47.4
-0.1
1.8
67.71
42.4

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028770
74195413 - 74277115
81703
ENSAPLT00000020641
74149628 - 74277115
127488
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000034703
74191017 - 74277115
86099
ENSAPLT00000033164
74191017 - 74280081
89065