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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74264891_74265611_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74264891 - 74265611
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGTCTTTAAAT
Flanking Amino Acid:
LGHTLYQFKKSPYLHARVRE
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.9
74.9
38.5
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
78.5
0.97
1.3
89.08
35.6

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000034703
74191017 - 74277115
86099
ENSAPLT00000033164
74191017 - 74280081
89065
ENSAPLT00000028770
74195413 - 74277115
81703
ENSAPLT00000020641
74149628 - 74277115
127488
ENSAPLT00000041143
74191017 - 74277115
86099