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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74274798_74276857_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74274798 - 74276857
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAAA
5'SS Class:
major
3'SS Sequence:
CTTCCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TATTCTTCCATT
Flanking Amino Acid:
ERVALLLKEQTAYPPTHYIR
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
67.6
39.3
Major BPS
65
0.37
1.3
76.1
38
Major PPT
82.9
0.74
0.8
76.9
30.4
Minor 5ss
37
-1.5
3.2
48.2
47.5
Minor BPS
54.4
0.22
2
77.09
39.9

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033164
74191017 - 74280081
89065
ENSAPLT00000028770
74195413 - 74277115
81703
ENSAPLT00000020641
74149628 - 74277115
127488
ENSAPLT00000041143
74191017 - 74277115
86099
ENSAPLT00000004670
74219282 - 74277115
57834
ENSAPLT00000034703
74191017 - 74277115
86099