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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74277028_74280017_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74277028 - 74280017
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCAACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTGTTCAACC
Flanking Amino Acid:
PLIMIGMIPIRYNLLPRIIE
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.3
0.39
0.9
64.3
36.8
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
56.4
0.18
2
71.25
40.1

Associated Gene:

Gene:
SLC4A11
Ensembl Gene ID:
ENSAPLG00000004523
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033164
74191017 - 74280081
89065