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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74296050_74302203_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74296050 - 74302203
Intron Length:
6154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTTCCCCTAAGC
Flanking Amino Acid:
IMTLCIISVDRYLGITRPLT
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
90.9
0.92
0.6
83.9
31.1
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
53.3
0.08
2
68.8
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046785
74291604 - 74303975
12372