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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74349375_74351535_R

Intron Information:

Intron Rank:
134164
Intron Class:
major
Intron Phase:
Intron Coordinates:
74349375 - 74351535
Intron Length:
2161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATATCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.7
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
37.5
-1.4
2.4
42.3
44.5
Minor BPS
44.1
-0.3
1.9
60.49
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019468
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021118
74348000 - 74351720
3721