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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74376038_74381454_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74376038 - 74381454
Intron Length:
5417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACCGATTT
Flanking Amino Acid:
ASRFLRRPGPAEEEPQQNAA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
72.2
39.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
88.7
0.87
0.6
84.2
23.8
Minor 5ss
31.9
-2.1
3.2
43.3
44.4
Minor BPS
41
-0.6
2
60.27
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026990
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047475
74375755 - 74400430
24676
ENSAPLT00000023015
74375755 - 74395707
19953