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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74448350_74450126_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74448350 - 74450126
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CCCCCCAAAAAA
Flanking Amino Acid:
TDYVNASFIDGYRQKDSYIA
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78.8
0.65
0.9
73.7
36.9
Minor 5ss
37.1
-1.5
3.2
54.8
42.5
Minor BPS
41.8
-0.6
1.9
46.53
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027783
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029558
74445753 - 74450755
5003