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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74450204_74450551_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74450204 - 74450551
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
GCTTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTCCCCAAAACT
Flanking Amino Acid:
KKNRVLQIIPYEFNRVIIPV
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
66.4
44.7
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
79.7
0.67
0.9
76.4
37.6
Minor 5ss
36.8
-1.5
3.5
52.1
44.8
Minor BPS
55.5
0.25
2
78.49
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027783
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029558
74445753 - 74450755
5003