About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74647767_74652174_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74647767 - 74652174
Intron Length:
4408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
GCTTCCATAACC
Flanking Amino Acid:
IGGRVQSVKLGHATFELGAT
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
65
0.37
1.3
76.1
38
Major PPT
79.7
0.67
0.8
73.7
30.9
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
69.9
0.6
1.6
76.48
39.5

Associated Gene:

Gene:
SMOX
Ensembl Gene ID:
ENSAPLG00000003135
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003186
74647532 - 74668808
21277