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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_74652402_74659475_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74652402 - 74659475
Intron Length:
7074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
CTGTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTGATTCACAT
Flanking Amino Acid:
VEEFSDLYNEVYNLTQEFFQ
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
41.2
-0.5
2
59.05
43.9

Associated Gene:

Gene:
SMOX
Ensembl Gene ID:
ENSAPLG00000003135
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003186
74647532 - 74668808
21277