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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7532_14215_F

Intron Information:

Intron Rank:
125365
Intron Class:
major
Intron Phase:
Intron Coordinates:
7532 - 14215
Intron Length:
6684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TTTCATTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGAAATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.8
0.7
84.4
30.1
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
58.3
0.34
1.5
71.55
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017531
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027859
7251 - 28751
21501