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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7690954_7691398_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7690954 - 7691398
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
TVLMRHENILGFIAADIKGT
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
BMPR1B
Ensembl Gene ID:
ENSAPLG00000003297
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043190
7515365 - 7697886
182522
ENSAPLT00000003413
7502282 - 7697886
195605