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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7691697_7693994_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7691697 - 7693994
Intron Length:
2298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTG
Flanking Amino Acid:
ADLGLAVKFISDTNEVDIPP
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.7
81.8
28.5
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
56.7
0.07
1.6
61.8
41.5

Associated Gene:

Gene:
BMPR1B
Ensembl Gene ID:
ENSAPLG00000003297
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043190
7515365 - 7697886
182522
ENSAPLT00000003413
7502282 - 7697886
195605