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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7695966_7697760_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7695966 - 7697760
Intron Length:
1795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCATCC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CTTCCATTGATT
Flanking Amino Acid:
SFPNRWSSDECLRQMGKLMM
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
60.6
39.6
Major BPS
76.2
0.65
1
67
39.8
Major PPT
82
0.72
0.7
77.2
24.7
Minor 5ss
43.7
-0.7
3.1
60.8
43.7
Minor BPS
61
0.43
1.6
77.83
38.6

Associated Gene:

Gene:
BMPR1B
Ensembl Gene ID:
ENSAPLG00000003297
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043190
7515365 - 7697886
182522
ENSAPLT00000003413
7502282 - 7697886
195605