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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7720528_7722229_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7720528 - 7722229
Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGATCTTTAAAT
Flanking Amino Acid:
KHQAAQGPWEDVVVVGEENF
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.7
77.8
24.2
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
73.6
0.82
1.3
83.21
37.2

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034531
7711520 - 7950938
239419
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419