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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7722399_7730742_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7722399 - 7730742
Intron Length:
8344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACGT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCACCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTCCCACATCC
Flanking Amino Acid:
YVTVHRKESMRPPIEDSQTL
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.8
42.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
63.7
0.31
0.9
60.5
34.8
Minor 5ss
33
-1.9
3.3
48.4
47.1
Minor BPS
45.7
-0.3
2.1
61.37
43.5

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419
ENSAPLT00000034531
7711520 - 7950938
239419