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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7730831_7733443_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7730831 - 7733443
Intron Length:
2613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCCATTT
Flanking Amino Acid:
LGGHLIIPNSGVSLLIPAGA
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
48.8
-0
2.1
76.74
40.3

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419
ENSAPLT00000034531
7711520 - 7950938
239419