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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_773302_778879_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
773302 - 778879
Intron Length:
5578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
GGGACACTGACA
Flanking Amino Acid:
KRANPNARALRGETALHMAA
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
58.7
45.8
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
85.3
0.8
0.8
80.6
31.4
Minor 5ss
41
-1
3.2
52.9
45.3
Minor BPS
43.6
-0.5
1.9
51.22
39.4

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000048349
577881 - 868501
290621
ENSAPLT00000047223
577881 - 865443
287563
ENSAPLT00000043667
577881 - 868501
290621