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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7733789_7735060_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7733789 - 7735060
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATCT
Flanking Amino Acid:
QPVNIKAARQDLLAVPPDLT
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
74.3
37.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70
0.45
1
63.6
36.5
Minor 5ss
36.9
-1.5
2.6
45.1
42.8
Minor BPS
60.1
0.4
1.8
79.56
42.7

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419
ENSAPLT00000034531
7711520 - 7950938
239419