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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7753775_7763877_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7753775 - 7763877
Intron Length:
10103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACCCTTTTAAAC
Flanking Amino Acid:
RPPEGIPVAEVEWLKNEEVI
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
0.9
59.7
41.5
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
51.2
0.02
1.4
54.48
37.6

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034531
7711520 - 7950938
239419
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419
ENSAPLT00000045868
7753586 - 7978636
225051