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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_776100_776271_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
776100 - 776271
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAAAAA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTAAAA
U12 Branch Point Sequence:
AGGAGTAAAACT
Flanking Amino Acid:
YGASIQAITESGLTPIHVAA
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
35.7
Major BPS
49.6
-0
1.1
57
36.4
Major PPT
84.5
0.78
0.8
79.9
32
Minor 5ss
30.7
-2.2
3.2
39.2
46.2
Minor BPS
38.8
-0.7
2.1
52.42
42.4

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000022370
682733 - 868670
185938