About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_776371_778879_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
776371 - 778879
Intron Length:
2509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
GGGACACTGACA
Flanking Amino Acid:
NGASPDVTNIRGETALHMAA
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
85.3
0.8
0.8
80.6
31.4
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
43.6
-0.5
1.9
51.22
39.4

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000022370
682733 - 868670
185938