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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7763982_7775544_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7763982 - 7775544
Intron Length:
11563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTCTCCTTCTCC
Flanking Amino Acid:
KSRKAYVRIAYLRKTFEQEP
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
69.1
35.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.1
0.66
0.7
76.8
25.1
Minor 5ss
34.7
-1.7
3.4
53.4
43.8
Minor BPS
43.5
-0.5
3.6
66.76
44.8

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034531
7711520 - 7950938
239419
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419
ENSAPLT00000045868
7753586 - 7978636
225051