About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7775689_7792407_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7775689 - 7792407
Intron Length:
16719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTGACACTGACT
Flanking Amino Acid:
VVDERVDETSGLIVREVSIE
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.2
37.4
Major BPS
69.8
0.49
1
61
37.5
Major PPT
74.2
0.55
0.9
66.6
35.6
Minor 5ss
38.8
-1.3
2.9
50
46.2
Minor BPS
47.1
-0.1
2
67.21
43

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030866
7711520 - 7902896
191377
ENSAPLT00000002392
7711520 - 7950938
239419
ENSAPLT00000045868
7753586 - 7978636
225051
ENSAPLT00000034531
7711520 - 7950938
239419