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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7792630_7902751_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7792630 - 7902751
Intron Length:
110122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
CSEGWISSIPDDDFFHELPE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030866
7711520 - 7902896
191377