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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7792630_7950814_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7792630 - 7950814
Intron Length:
158185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
GASRPGSAAQDDDFFHELPE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034531
7711520 - 7950938
239419
ENSAPLT00000002392
7711520 - 7950938
239419