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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_782982_784339_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
782982 - 784339
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGACATCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTCCTGACAT
Flanking Amino Acid:
KGASPHATAKNGYTPLHIAA
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
60.2
0.23
1
58.8
42.5
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
58.2
0.33
1.9
79.39
42

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000047223
577881 - 865443
287563
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000048349
577881 - 868501
290621