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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_788514_791004_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
788514 - 791004
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTCTCTCCA
Flanking Amino Acid:
HGAKPNAITTNGNTALAIAR
Intron Amino Acid Position:
806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
41.1
-0.7
3.6
71.02
41

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000048349
577881 - 868501
290621
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000047223
577881 - 865443
287563