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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7955591_7978518_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7955591 - 7978518
Intron Length:
22928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
MLQLEACESPAPAAS
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.7
0.6
0.8
69.8
36.3
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
UNC5C
Ensembl Gene ID:
ENSAPLG00000002017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045868
7753586 - 7978636
225051