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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_827522_828431_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
827522 - 828431
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAGC
5'SS Class:
major
3'SS Sequence:
TCTTTTGCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTTGTTTGATG
Flanking Amino Acid:
LNEILNGMDEVLDTPEELEK
Intron Amino Acid Position:
1106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
62.5
42.3
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
81.8
0.72
0.8
80.6
31.5
Minor 5ss
45.5
-0.5
2.7
61.4
43
Minor BPS
60
0.17
1.8
69.68
38.6

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000047223
577881 - 865443
287563
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000048349
577881 - 868501
290621