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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8337964_8427667_F

Intron Information:

Intron Rank:
141393
Intron Class:
major
Intron Phase:
Intron Coordinates:
8337964 - 8427667
Intron Length:
89704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAA
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
51.9
0.05
1.2
44.7
38.6
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037577
8308227 - 8464865
156639
ENSAPLT00000032818
8274081 - 8464865
190785
ENSAPLT00000017333
8313246 - 8464865
151620