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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8337964_8463975_F

Intron Information:

Intron Rank:
141414
Intron Class:
major
Intron Phase:
Intron Coordinates:
8337964 - 8463975
Intron Length:
126012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TGCTATTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
82
0.72
0.9
75.7
37.9
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
52.2
0.06
1.8
64.84
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037973
8315607 - 8464458
148852