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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_836160_838669_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
836160 - 838669
Intron Length:
2510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TAATTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
AEVARSRDVEVLEGKPIYVD
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.9
0.49
1
67.1
38.7
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000048349
577881 - 868501
290621
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000047223
577881 - 865443
287563