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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_841102_843813_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
841102 - 843813
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCTTTTAAATT
Flanking Amino Acid:
LNITLPVYTKVDMTSEKNQQ
Intron Amino Acid Position:
1337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
52.3
0.15
1.6
65.71
40

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048349
577881 - 868501
290621