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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_841794_843813_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
841794 - 843813
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCTTTTAAATT
Flanking Amino Acid:
SESDQEQEEEVDMTSEKNQQ
Intron Amino Acid Position:
1448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
52.3
0.15
1.6
65.71
40

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000047223
577881 - 865443
287563
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000043667
577881 - 868501
290621