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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8418717_8488195_R

Intron Information:

Intron Rank:
136861
Intron Class:
major
Intron Phase:
Intron Coordinates:
8418717 - 8488195
Intron Length:
69479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTATATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.2
0.66
0.9
73
36.8
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
53.3
0.18
1.9
76.2
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021126
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026095
8418698 - 8537051
118354