Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8427744_8431306_F

Intron Information:

Intron Rank:

141394

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8427744 - 8431306

Intron Length:

3563

Sequence Information:

Terminal Dinucleotides:

GT-AA

5'SS Sequence:

TCG|GTAAAGATT

5'SS Class:

major

3'SS Sequence:

GATGCTTTTGCAA|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GTTATAATAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

76.2

39.1

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

42.7

-0.4

3.2

61.7

44.1

Minor 5ss

-1.3

3.5

57.9

46.5

Minor BPS

47.9

-0.1

1.8

62.99

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026148

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037577

8308227 - 8464865

156639

ENSAPLT00000032818

8274081 - 8464865

190785

ENSAPLT00000017333

8313246 - 8464865

151620