Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8431395_8432784_F

Intron Information:

Intron Rank:

141395

Intron Class:

major

Intron Phase:

Intron Coordinates:

8431395 - 8432784

Intron Length:

1390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAATCAAT

5'SS Class:

major

3'SS Sequence:

TGTTCTGCATTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

TCTTCTTTCAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

70.7

41.1

Major BPS

76.9

0.67

1.2

31.9

Major PPT

68.1

0.41

67.5

Minor 5ss

40.7

-1

2.9

49.5

46.5

Minor BPS

0.46

1.9

80.63

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026148

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037577

8308227 - 8464865

156639

ENSAPLT00000032818

8274081 - 8464865

190785

ENSAPLT00000017333

8313246 - 8464865

151620