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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8441714_8463975_F

Intron Information:

Intron Rank:
141398
Intron Class:
major
Intron Phase:
Intron Coordinates:
8441714 - 8463975
Intron Length:
22262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGCTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TGCTATTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
82
0.72
0.9
75.7
37.9
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
52.2
0.06
1.8
64.84
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037577
8308227 - 8464865
156639
ENSAPLT00000032818
8274081 - 8464865
190785
ENSAPLT00000017333
8313246 - 8464865
151620
ENSAPLT00000040328
8441417 - 8464705
23289