Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8471260_8488195_R

Intron Information:

Intron Rank:

136863

Intron Class:

major

Intron Phase:

Intron Coordinates:

8471260 - 8488195

Intron Length:

16936

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

26.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

98.8

1.1

0.5

95.2

16.3

Minor 5ss

41.1

-1

2.5

50.4

46.1

Minor BPS

71.2

0.66

1.5

82.45

31.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021126

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038669

8470881 - 8553786

82906