Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8488307_8536533_R

Intron Information:

Intron Rank:

136862

Intron Class:

major

Intron Phase:

Intron Coordinates:

8488307 - 8536533

Intron Length:

48227

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTGT

5'SS Class:

strong_major

3'SS Sequence:

CATGTTTTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTCTCATAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.9

80.5

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

68.3

0.41

64.8

41.1

Minor 5ss

-0.2

2.5

67.3

43.8

Minor BPS

67.8

0.64

1.6

86.17

33.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021126

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026095

8418698 - 8537051

118354