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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8559631_8559736_R

Intron Information:

Intron Rank:
142639
Intron Class:
major
Intron Phase:
Intron Coordinates:
8559631 - 8559736
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATC
5'SS Class:
major
3'SS Sequence:
TGTGCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
TGTGCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.9
40.6
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
75.3
0.57
0.9
68.4
37.4
Minor 5ss
35.8
-1.6
3.4
51.8
45
Minor BPS
65
0.47
1.9
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024012
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019088
8559017 - 8573346
14330