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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8559817_8565563_R

Intron Information:

Intron Rank:
142640
Intron Class:
major
Intron Phase:
Intron Coordinates:
8559817 - 8565563
Intron Length:
5747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
TCCTTTCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.7
0.53
0.9
69.1
37
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
48.3
-0.1
1.7
55.8
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024012
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019088
8559017 - 8573346
14330