Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8565097_8565563_R

Intron Information:

Intron Rank:

142643

Intron Class:

major

Intron Phase:

Intron Coordinates:

8565097 - 8565563

Intron Length:

467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTCC

5'SS Class:

major

3'SS Sequence:

TCTCTTATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TCTTCATTATCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.2

69.6

35.5

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

85.9

0.81

0.8

29.3

Minor 5ss

43.9

-0.7

2.3

54.4

42.7

Minor BPS

63.4

0.42

1.9

76.51

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035505

8564988 - 8573722

8735