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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8576029_8576154_R

Intron Information:

Intron Rank:
149482
Intron Class:
major
Intron Phase:
Intron Coordinates:
8576029 - 8576154
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79.2
0.66
1
79.5
32.8
Minor 5ss
34.7
-1.7
2.9
42.7
44.3
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027711
8575262 - 8576683
1422