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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_862646_863810_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
862646 - 863810
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATCA
5'SS Class:
major
3'SS Sequence:
TTCGTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTTTGGGACA
Flanking Amino Acid:
DEHGQTVVKKVTRKIIRRYV
Intron Amino Acid Position:
1822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.9
33.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.7
0.76
0.8
81.3
30.8
Minor 5ss
44.4
-0.6
2.7
57.7
46.4
Minor BPS
46.3
-0.3
2.1
62.88
37.5

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000048349
577881 - 868501
290621
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000047223
577881 - 865443
287563