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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_863976_865242_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
863976 - 865242
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGATCA
5'SS Class:
major
3'SS Sequence:
TCTAACCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGTTTTCTAACC
Flanking Amino Acid:
VLKSDSEQSEVTLSEPGVLP
Intron Amino Acid Position:
1877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.4
35.1
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
76.3
0.59
0.9
66.1
40.4
Minor 5ss
33.6
-1.9
2.9
40.4
45.2
Minor BPS
64.2
0.43
1.6
75.34
34.8

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000032144
738078 - 868670
130593
ENSAPLT00000048349
577881 - 868501
290621
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000047223
577881 - 865443
287563
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000043667
577881 - 868501
290621