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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_865426_868486_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
865426 - 868486
Intron Length:
3061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GATTTCTCATTC
Flanking Amino Acid:
LPSAKEDFEEDNAE*
Intron Amino Acid Position:
1938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
49.2
-0
1.8
60.27
39

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043667
577881 - 868501
290621
ENSAPLT00000031523
577881 - 868501
290621
ENSAPLT00000011492
682733 - 868501
185769
ENSAPLT00000048349
577881 - 868501
290621