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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_866577_868486_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
866577 - 868486
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGCTT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GATTTCTCATTC
Flanking Amino Acid:
IMKEDGSIIKRTMLNKASTQ
Intron Amino Acid Position:
1934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
67.2
43.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
39.1
-1.2
3.3
56.6
47.6
Minor BPS
49.2
-0
1.8
60.27
39

Associated Gene:

Gene:
ANK2
Ensembl Gene ID:
ENSAPLG00000010858
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028235
577881 - 868670
290790
ENSAPLT00000022370
682733 - 868670
185938
ENSAPLT00000022125
686508 - 868670
182163
ENSAPLT00000019915
577881 - 868670
290790
ENSAPLT00000032144
738078 - 868670
130593